Estimate contamination from XX and XY based on observed counts

Estimate contamination from XX and XY based on observed counts

Usage

estimateGamma(nvector, avector, c1, c2, correction)

Arguments

nvector

observed read counts

avector

vector to change

c1

X multiplier for karyotype 1

c2

X multiplier for karyotype 2

correction

error rate for Y mapping for non-Y karyotypes

Value

estimated contamination