Task: takes read counts and makes useful file
Usage
processReadCounts(
rawReadCountsIn,
refType,
minTotal = 1000,
minSamplesPerProtocol = 30
)
Arguments
- rawReadCountsIn
the reads counts via KP
- refType
for capture, use only on-target (F)?
- minTotal
minimum number of protocol counts to be included
- minSamplesPerProtocol
"auto"="autosomal"; "sca"="sex chromosomal"