Task: takes read counts and makes useful file
Usage
processReadCounts(rawReadCountsIn, refType, minTotal = 1000, minProtocol = 30)
Arguments
- rawReadCountsIn
the reads counts via KP
- refType
for capture, use only on-target (F)?
- minTotal
minimum number of protocol counts to be included
- minProtocol
"auto"="autosomal"; "sca"="sex chromosomal"