A function to print the result of the combined analysis to screen

Usage

printChASM(inChASM, lines = 20)

Arguments

inChASM: the result of a full ChASM analysis (output from runChASM)
lines: the number of lines to print to screen

Value

print output

Examples

example_calls <- runChASM(rawReadCountsIn = example_data)

printChASM(inChASM = example_calls, lines = 10)
#> # A tibble: 222 × 11
#>    sample  protocol unusual flags autosomal_call sca_call C_call autosomal_total
#>    <chr>   <chr>    <lgl>   <int> <chr>          <chr>    <chr>            <dbl>
#>  1 Ind_1_1 protoco… TRUE        3 No Aneuploidy  XX       No Si…           89539
#>  2 Ind_1_2 protoco… FALSE       1 No Aneuploidy  XX       No Si…           48376
#>  3 Ind_3_1 protoco… TRUE        2 No Aneuploidy  XY       No Si…          113335
#>  4 Ind_4_1 protoco… FALSE       0 No Aneuploidy  XX       No Si…          406472
#>  5 Ind_5_1 protoco… FALSE       0 No Aneuploidy  XX       No Si…           27731
#>  6 Ind_6_1 protoco… FALSE       0 No Aneuploidy  XY       No Si…          681256
#>  7 Ind_7_2 protoco… FALSE       0 No Aneuploidy  XY       No Si…          130928
#>  8 Ind_9_1 protoco… FALSE       0 No Aneuploidy  XX       No Si…          425906
#>  9 Ind_15… protoco… FALSE       1 No Aneuploidy  XX       No Si…            3364
#> 10 Ind_17… protoco… FALSE       1 No Aneuploidy  XY       No Si…           11699
#> # ℹ 212 more rows
#> # ℹ 3 more variables: sca_total <dbl>, automsomal_maxP <dbl>, sca_maxP <dbl>