Combine both autosomal and sex chromosomal analyses into one output
Usage
summary_calls(
calls.combined,
minTotal = 60000,
minPosterior = 0.95,
ignoreUnusual = FALSE,
printProtocol = FALSE
)
Arguments
- calls.combined
the result of combining both autosomal and sca analyses
- minTotal
minimum total for autosomal or sca analyses
- minPosterior
minimum value maxP can take (i.e. minimum posterior probability accepted)
- ignoreUnusual
filter our unusual observations?
- printProtocol
print protocol column?